Gene: PAX5

Alternate names for this Gene: ALL3|BSAP

Gene Summary: This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. Paired box transcription factors are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. This gene encodes the B-cell lineage specific activator protein that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis and so the encoded protein may also play a role in neural development and spermatogenesis. This gene is located at 9p13, which is involved in t(9;14)(p13;q32) translocations recurring in small lymphocytic lymphomas of the plasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of the IgH gene into close proximity of the PAX5 promoter, suggesting that the deregulation of transcription of this gene contributes to the pathogenesis of these lymphomas. Alternative splicing results in multiple transcript variants encoding different isoforms.

Gene is located in Chromosome: 9

Location in Chromosome : 9p13.2

Description of this Gene: paired box 5

Type of Gene: protein-coding

rs143723948 in PAX5 gene and Coronary Artery Disease PMID 29695241 2018 Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.

rs143723948 in PAX5 gene and Diabetes Mellitus, Insulin-Dependent PMID 29695241 2018 Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.

rs1329573 in PAX5 gene and Intelligence PMID 22449649 2012 Genome-wide association study of intelligence: additive effects of novel brain expressed genes.

rs7030813 in PAX5 gene and Major Depressive Disorder PMID 29662059 2018 Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.

PMID 30718901 2019 Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.

rs16933812 in PAX5 gene and Obesity PMID 22013104 2012 Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.