Condition: Cleft Palate
rs481931 in
ABCA4 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs11072494 in
ARID3B gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs6740960 in
C2orf91 gene and
Cleft Palate
PMID 28087736 2017 Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only.
rs7017252 in
CCDC26 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs68092024 in
CMSS1;FILIP1L gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs1038294 in
COL8A1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs7552 in
CYRIA gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs78212183 in
DEPDC5 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs13317 in
FGFR1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs1688766 in
FILIP1L;CMSS1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs12681366 in
FSBP;RAD54B gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs2073764 in
GNB1L gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs1838105 in
GOSR2;LRRC37A2 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs41268753 in
GRHL3 gene and
Cleft Palate
PMID 27018472 2016 In both the discovery and replication samples, rs41268753 conferred increased risk for CP (OR = 8.3, 95% CI 4.1-16.8; OR = 2.16, 95% CI 1.43-3.27, respectively).
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs2235371 in
IRF6 gene and
Cleft Palate
PMID 25775280 2015 Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.
rs3741442 in
KRT18 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs55658222 in
LINC00976;CCDC26 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs7692299 in
LINC01091 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs6449957 in
LINC02219 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs143238378 in
LINC02476 gene and
Cleft Palate
PMID 30452639 2019 Genomic analyses in African populations identify novel risk loci for cleft palate.
rs6495117 in
LOC102723750;CLK3 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs113691307 in
LOC102724542 gene and
Cleft Palate
PMID 30452639 2019 Genomic analyses in African populations identify novel risk loci for cleft palate.
rs13041247 in
LOC102724968 gene and
Cleft Palate
PMID 25775280 2015 Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs8001641 in
LOC105370275 gene and
Cleft Palate
PMID 30067744 2018 Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.
rs112800917 in
LOC105373887 gene and
Cleft Palate
PMID 28087736 2017 Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only.
rs2405373 in
LOC105376157 gene and
Cleft Palate
PMID 30452639 2019 Genomic analyses in African populations identify novel risk loci for cleft palate.
rs72804706 in
LOC105378314 gene and
Cleft Palate
PMID 30277614 2018 Genome-wide interaction studies identify sex-specific risk alleles for nonsyndromic orofacial clefts.
rs10808812 in
LOC107986952;ZFHX4-AS1 gene and
Cleft Palate
PMID 28087736 2017 Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only.
rs3746101 in
MKNK2 gene and
Cleft Palate
PMID 28087736 2017 Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only.
rs5763674 in
MTMR3 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs11066150 in
NAA25 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs1878918 in
NRG1 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs12944377 in
NTN1 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
PMID 25775280 2015 Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.
rs11597348 in
OPALIN gene and
Cleft Palate
PMID 30452639 2019 Genomic analyses in African populations identify novel risk loci for cleft palate.
rs742071 in
PAX7 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs12175475 in
PRKN gene and
Cleft Palate
PMID 27018472 2016 A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.
rs10512248 in
PTCH1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs12229892 in
PTPN11 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs705704 in
RPS26;LOC105369780 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs6126344 in
SALL4 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs4132699 in
SEMA4D gene and
Cleft Palate
PMID 28087736 2017 Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only.
rs2006771 in
SFI1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs6838801 in
SHROOM3;LOC105377290 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs10886040 in
SHTN1 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
PMID 25775280 2015 Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.
PMID 30067744 2018 Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.
rs10133673 in
SLC25A21 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs11774066 in
STK3 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs189675673 in
SULT2A1 gene and
Cleft Palate
PMID 30452639 2019 Genomic analyses in African populations identify novel risk loci for cleft palate.
rs1588366 in
TANC2 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs11582254 in
TMCO4 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs2304269 in
TMEM19 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs76479869 in
TP63 gene and
Cleft Palate
PMID 28054174 2017 Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.
rs2289187 in
UBL7 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs6585429 in
VAX1 gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs957448 in
VIRMA gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs1487022 in
VPS13B gene and
Cleft Palate
PMID 28232668 2017 Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.
rs117496742 in
YAP1 gene and
Cleft Palate
PMID 27018472 2016 A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.